calcGseaStatBatchCpp: Calculates GSEA statistic valus for all gene sets in...
In yduan004/signatureSearch: Environment for Gene Expression Searching Combined with Functional Enrichment Analysis
calcGseaStatBatchCpp R Documentation
Calculates GSEA statistic valus for all gene sets in 'selectedStats' list.
Description
Takes O(n + mKlogK) time, where n is the number of genes, m is the number of gene sets,
and k is the mean gene set size.
Usage
calcGseaStatBatchCpp(stats, selectedGenes, geneRanks)
Arguments
stats
Numeric vector of gene-level statistics sorted in decreasing order
selectedGenes
List of integer vector with integer gene IDs (from 1 to n)
geneRanks
Integer vector of gene ranks
Value
Numeric vector of GSEA statistics of the same length as 'selectedGenes' list
yduan004/signatureSearch documentation built on Feb. 19, 2024, 9:30 a.m.
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| calcGseaStatBatchCpp | R Documentation |
Calculates GSEA statistic valus for all gene sets in 'selectedStats' list.
Description
Takes O(n + mKlogK) time, where n is the number of genes, m is the number of gene sets, and k is the mean gene set size.
Usage
calcGseaStatBatchCpp(stats, selectedGenes, geneRanks)
Arguments
stats |
Numeric vector of gene-level statistics sorted in decreasing order |
selectedGenes |
List of integer vector with integer gene IDs (from 1 to n) |
geneRanks |
Integer vector of gene ranks |
Value
Numeric vector of GSEA statistics of the same length as 'selectedGenes' list
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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