Files in yeguanhuav/visualization416S
Visualization functions for 16S and Metagenomics analysis
.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
R/16S_analysis_functions_Yip.R
R/construct_lefse_table.R
R/construct_otu_table.R
R/convert_to_percentage.R
R/extract_metadata_phyloseq.R
R/log2fc.R
R/plot_alpha_diversity.R
R/plot_beta_diversity.R
R/plot_correlation.R
R/plot_sparsity.R
R/plot_stacked_bar.R
R/reshape_metaphlan2_result.R
R/track_reads_dada2.R
README.Rmd
README.md
README_files/figure-gfm/Bray-Curtis Genus Level with PC1 and PC2 info-1.png
README_files/figure-gfm/Bray-Curtis Genus Level-1.png
README_files/figure-gfm/Bray-Curtis with PC1 and PC2 info-1.png
README_files/figure-gfm/Bray-Curtis-1.png
README_files/figure-gfm/Chao1-1.png
README_files/figure-gfm/PCoA with PC1 and PC2 info-1.png
README_files/figure-gfm/PCoA with PC1 info-1.png
README_files/figure-gfm/PCoA with PC2 info-1.png
README_files/figure-gfm/Shannon Genus Level-1.png
README_files/figure-gfm/Shannon-1.png
README_files/figure-gfm/Stacked barplot 1-1.png
README_files/figure-gfm/Stacked barplot 2-1.png
README_files/figure-gfm/Stacked barplot 3-1.png
README_files/figure-gfm/Stacked barplot 4-1.png
README_files/figure-gfm/correlation 1-1.png
README_files/figure-gfm/correlation 2-1.png
README_files/figure-gfm/correlation 3-1.png
README_files/figure-gfm/correlation 4-1.png
README_files/figure-gfm/log2fc 1-1.png
README_files/figure-gfm/log2fc 2-1.png
README_files/figure-gfm/log2fc 3-1.png
README_files/figure-gfm/sparsity-1.png
README_files/figure-gfm/track reads-1.png
data/color_palette.png
data/curatedMetagenomicData_tree.rda
data/demo_dada2_result.rda
data/demo_phyloseq_object.rda
data/distinctive_colors.rda
man/construct_lefse_table.Rd
man/construct_otu_table.Rd
man/convert_to_percentage.Rd
man/extract_metadata_phyloseq.Rd
man/log2fc.Rd
man/plot_alpha_diversity.Rd
man/plot_beta_diversity.Rd
man/plot_correlation.Rd
man/plot_sparsity.Rd
man/plot_stacked_bar.Rd
man/reshape_metaphlan2_result.Rd
man/track_reads_dada2.Rd
xviz.Rproj
