clotu-package: Classification of OTUs
In yewei369/clotu: Classification of OTUs
Description
Details
Author(s)
References
Description
different OTU classification methods based on Gaussian assumption for non-zero OTUs
Details
Based on Kaul's assumption that non-zero OTUs follow a Gaussian distribution, this package incorporates the original model and its mutations with modifications in normalizing OTU counts, shrinking number of OTUs and 3 mutated models of calculating covariances.
Author(s)
Jun Li <yewei369@gmail.com>
References
A. Kaul, O. Davidov and S. D. Peddada, "Structural zeroes in high-dimensional data with applications to microbiome studies", Biostatistics, vol. 18, no. 3, p. 422-433, 2017.
Jun Li, "Classification of microbiome data with structural zeroes and small samples", master thesis at Link\"oping University, 2021
yewei369/clotu documentation built on Dec. 23, 2021, 7:19 p.m.
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Description Details Author(s) References
Description
different OTU classification methods based on Gaussian assumption for non-zero OTUs
Details
Based on Kaul's assumption that non-zero OTUs follow a Gaussian distribution, this package incorporates the original model and its mutations with modifications in normalizing OTU counts, shrinking number of OTUs and 3 mutated models of calculating covariances.
Author(s)
Jun Li <yewei369@gmail.com>
References
A. Kaul, O. Davidov and S. D. Peddada, "Structural zeroes in high-dimensional data with applications to microbiome studies", Biostatistics, vol. 18, no. 3, p. 422-433, 2017.
Jun Li, "Classification of microbiome data with structural zeroes and small samples", master thesis at Link\"oping University, 2021
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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