zomotu: Zombie OTUs
In yewei369/clotu: Classification of OTUs
Description
Usage
Arguments
Value
Examples
Description
Find zombie OTUs, and preprocess the dataset through deleting zombie OTUs and zombie observations
Usage
1
Arguments
data,
matrix of OTU data
thr,
threshold for zombie OTU
del,
when T, delete zombie OTUs
Value
a list of preprocessed dataset, reference OTUs
Examples
1
2
3
da<-simotu.gaus(50,700,3,nref=5,full.mean=10000,unif.min=0,unif.max=0.4,seed=1234)
al<-data_extract(da,Target %in% c("target1","target2","target3")) # no otu names
zomotu(al,thr=0)
yewei369/clotu documentation built on Dec. 23, 2021, 7:19 p.m.
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Description Usage Arguments Value Examples
Description
Find zombie OTUs, and preprocess the dataset through deleting zombie OTUs and zombie observations
Usage
1 |
Arguments
data, |
matrix of OTU data |
thr, |
threshold for zombie OTU |
del, |
when T, delete zombie OTUs |
Value
a list of preprocessed dataset, reference OTUs
Examples
1 2 3 | da<-simotu.gaus(50,700,3,nref=5,full.mean=10000,unif.min=0,unif.max=0.4,seed=1234)
al<-data_extract(da,Target %in% c("target1","target2","target3")) # no otu names
zomotu(al,thr=0)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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