SubsetNewick: Subset a newick tree
In yh986/PhyFormat: Format Bioinformatics Data
Description
Simplifies a newick tree by keeping only the specified subset of tips and the internal nodes joining them. Useless internal branches are merged by simple addition.
Usage
1
SubsetNewick(tipnames, newicktree)
Arguments
tipnames
A character vector with the names of the tips to keep, which must be a subset of the tip names in 'newicktree'
newicktree
The newick-format tree. Tip names (leaf node names) must not contain punctuation marks besides dashes or underscores
yh986/PhyFormat documentation built on Jan. 3, 2022, 12:50 p.m.
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Description
Simplifies a newick tree by keeping only the specified subset of tips and the internal nodes joining them. Useless internal branches are merged by simple addition.
Usage
1 | SubsetNewick(tipnames, newicktree)
|
Arguments
tipnames |
A character vector with the names of the tips to keep, which must be a subset of the tip names in 'newicktree' |
newicktree |
The newick-format tree. Tip names (leaf node names) must not contain punctuation marks besides dashes or underscores |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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