physeq: physeq constructor
In yh986/PhyFormat: Format Bioinformatics Data
Description
Usage
Arguments
Examples
Description
Creates a new physeq object (a list of sequences) from a vector of headings and sequences, which can then be saved as a FASTA or PHYLIP file.
Usage
1
physeq(headings, sequences)
Arguments
headings
Vector of sequence names
sequences
Vector of nucleotide/amino acid sequences
Examples
1
2
3
4
5
x <- physeq(c("Seq 1", "Seq 2"), c("RRARRPR", "PKKKRKV"))
print(x)
x$Headings #Get or modify headings
x$Sequences #Get or modify sequences
WriteFasta(x, "Seqs.fa")
yh986/PhyFormat documentation built on Jan. 3, 2022, 12:50 p.m.
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Description Usage Arguments Examples
Description
Creates a new physeq object (a list of sequences) from a vector of headings and sequences, which can then be saved as a FASTA or PHYLIP file.
Usage
1 | physeq(headings, sequences)
|
Arguments
headings |
Vector of sequence names |
sequences |
Vector of nucleotide/amino acid sequences |
Examples
1 2 3 4 5 | x <- physeq(c("Seq 1", "Seq 2"), c("RRARRPR", "PKKKRKV"))
print(x)
x$Headings #Get or modify headings
x$Sequences #Get or modify sequences
WriteFasta(x, "Seqs.fa")
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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