R/phenoGraph.R

In yishaishimoni/phenoClust: Find clusters by network modularity

#' @title Find clusters by network modularity
#'
#' @description
#' This package implements the PhenoGraph algorithm,
#' which first creates an adjacancy matrix according to k-nearest neighbours,
#' and then uses the Louvain algorithm to identify "communities" by
#' maximizing the modularity.
#'
#' In general, the only function that needs to be run is
#' \code{\link{phenoClust}}.
#' Other functions are available as utilities.
#'
#' @docType package
#' @name phenoGraph
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