manhattan_xwas: manhattan_xwas
In yixuanh/PXStools:
View source: R/manhattan_xwas.R
manhattan_xwas R Documentation
manhattan_xwas
Description
this is a function plot the p values of the XWAS results, analagous to a manhattan plot.
since the y axis is in the -log scale, there may be issues with plotting if the p value is zero or very close to zero (taking the neg log of it will be infinite)
Usage
manhattan_xwas(xdff, pval, thresh = 0.05)
Arguments
xdff
matrix returned from XWAS function, rownames of matrix should be the X variables
pval
column name of p value
thresh
p value threshold for signficance
Author(s)
Yixuan He, yixuan_he@hms.harvard.edu
yixuanh/PXStools documentation built on July 27, 2022, 10:27 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
View source: R/manhattan_xwas.R
| manhattan_xwas | R Documentation |
manhattan_xwas
Description
this is a function plot the p values of the XWAS results, analagous to a manhattan plot. since the y axis is in the -log scale, there may be issues with plotting if the p value is zero or very close to zero (taking the neg log of it will be infinite)
Usage
manhattan_xwas(xdff, pval, thresh = 0.05)
Arguments
xdff |
matrix returned from XWAS function, rownames of matrix should be the X variables |
pval |
column name of p value |
thresh |
p value threshold for signficance |
Author(s)
Yixuan He, yixuan_he@hms.harvard.edu
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.