pre_compareCohort: Create data frame for plot_compareCohort
In ylab-hi/lncGSEA: lncRNA Associated Gene Set Enrichement Analysis
Description
Usage
Arguments
Value
View source: R/plot_multiCompare.R
Description
Combine outputs of multiple cohort for a lncRNA from lnc_GSEA for heatmap plot
Usage
1
pre_compareCohort(lncRNA, cohorts, pathtofile, geneset = NULL)
Arguments
lncRNA
A character string which is the name of a transcript id, e.g.,"ENST00000561519"
cohorts
A upper case string showing one of TCGA cohorts, e.g, "PRAD"
pathtofile
A character string, the path to the datasets downloaded
geneset
A character string which gives the path to a gene set gmt file
Value
A data frame contains GSEA results of one lncRNA in multiple studies
ylab-hi/lncGSEA documentation built on Aug. 20, 2020, 9:41 a.m.
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Description Usage Arguments Value
View source: R/plot_multiCompare.R
Description
Combine outputs of multiple cohort for a lncRNA from lnc_GSEA for heatmap plot
Usage
1 | pre_compareCohort(lncRNA, cohorts, pathtofile, geneset = NULL)
|
Arguments
lncRNA |
A character string which is the name of a transcript id, e.g.,"ENST00000561519" |
cohorts |
A upper case string showing one of TCGA cohorts, e.g, "PRAD" |
pathtofile |
A character string, the path to the datasets downloaded |
geneset |
A character string which gives the path to a gene set gmt file |
Value
A data frame contains GSEA results of one lncRNA in multiple studies
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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