Files in ymatts/PhyC

Clustering cancer evolutional trees

.Rproj.user/6441DF95/sdb/prop/83B19F5F

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DESCRIPTION

LICHeE/data/README

LICHeE/data/ccRCC/EV003.txt

LICHeE/data/ccRCC/EV005.txt

LICHeE/data/ccRCC/EV006.txt

LICHeE/data/ccRCC/EV007.txt

LICHeE/data/ccRCC/RK26.txt

LICHeE/data/ccRCC/RMH002.txt

LICHeE/data/ccRCC/RMH004.txt

LICHeE/data/ccRCC/RMH008.txt

LICHeE/data/hgsc/case1.txt

LICHeE/data/hgsc/case2.txt

LICHeE/data/hgsc/case3.txt

LICHeE/data/hgsc/case4.txt

LICHeE/data/hgsc/case5.txt

LICHeE/data/hgsc/case5_a.txt

LICHeE/data/hgsc/case6.txt

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LICHeE/release/temp2/simulation_results/tree_9/VAF_s10_true.txt

LICHeE/sample_script

LICHeE/src/lineage/AAFClusterer.java

LICHeE/src/lineage/LineageEngine.java

LICHeE/src/lineage/PHYEdge.java

LICHeE/src/lineage/PHYNetwork.java

LICHeE/src/lineage/PHYNode.java

LICHeE/src/lineage/PHYTree.java

LICHeE/src/lineage/Parameters.java

LICHeE/src/lineage/SNVDataStore.java

LICHeE/src/lineage/SNVEntry.java

LICHeE/src/lineage/SNVGroup.java

LICHeE/src/util/CNVRegion.java

LICHeE/src/util/Visualizer.java

NAMESPACE

R/NSCLC.R R/ccRCC.R R/ccRCC_NSCLC.R R/create_meta.R R/depth_max.R R/diversity.R R/get_edgeIndex.R R/get_index.R R/get_max_depth.R R/lichee2edge.R R/meta_regis.R R/monomulti.R R/par_tree.R R/phyC.R R/phyCMD.R R/plot_phyC.R R/regis.R R/root_find.R R/simulation.R README.md

data/NSCLC.rda

data/ccRCC.rda

data/ccRCC_NSCLC.rda

data/simulation.rda

img/diveresity.jpeg

img/phyCMD.jpeg

man/NSCLC.Rd man/ccRCC.Rd man/ccRCC_NSCLC.Rd man/create.meta.Rd man/depth.max.Rd man/diversity.Rd man/get.edgeIndex.Rd man/get.index.Rd man/get.maxdepth.Rd man/lichee2edge.Rd man/meta.regis.tree.Rd man/phyC.Rd man/phyC.plot.Rd man/phyCMD.Rd man/regis.Rd man/resolve.monomulti.Rd man/simulation.Rd

misc/fig4.RData

ymatts/PhyC documentation built on May 4, 2019, 5:30 p.m.