ccrcc: Protein expression of clear renal cell carcinoma
In ymatts/RoDiCE: Robust differential co-expression test by copula

Description Usage Format Details Source References Examples

Protein abudance dataset of clear renal cell carcinoma (ccRCC) published by CPTAC/TCGA (Clark et al., 2019). Data are available from the CPTAC data portal in the CPTAC Clear Cell Renal Cell Carcinoma (CCRCC) Discovery Study The data labeled "CPTAC_CompRef_CCRCC_Proteome_CDAP_Protein_Report.r1" were used.

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ccrcc.subset

ccrcc.pbaf

An object of class list of length 2.

A list of two data.frame of 'tumor'(110 rows and 49 columns) and 'normal'(110 rows and 49 columns). The rows and columns correspond to the sample and the protein, respectively

https://cptac-data-portal.georgetown.edu

Clerk DJ et al.(2019) Integrated Proteogenomic Characterization of Clear Cell Renal Cell Carcinoma.Cell;179(4),964-983 e931.

data(ccrcc.subset) # Abudance matrix for 49 proteins as an example dataset
data(crccc.pbaf) # Abudance matrix for 10 proteins beloging to the PBAF complex as an example dataset

# There are normal and tumor group samples in each element of the list.
dim(ccrcc.subset$tumor)
dim(ccrcc.subset$normal)
dim(ccrcc.pbaf$tumor)
dim(ccrcc.pbaf$normal)