yocra3/LDclassifier: Group chromosomes by recombination history

Recombination history is based on a mixture model that, given a pair of SNP-blocks, separates chromosomes in two populations, one with high Linkage Disequilibrium (LD) and low recombination (linkage) and another with low LD and high recombination. The method use the classification of several SNP-block pairs in a region to group chromosomes in clusters with different recombination history. This package takes as input genotype phased data.

install.packages("remotes")
remotes::install_github("yocra3/LDclassifier")