LDclassifier: LDclassifier: Group chromosomes by recombination history
In yocra3/LDclassifier: Group chromosomes by recombination history
Description
LDclassifier infers recombination history based on a mixture model that, given a pair
of SNP-blocks, separates chromosomes in two populations, one with high Linkage Disequilibrium (LD)
and low recombination (linkage) and another with low LD and high recombination. The
method use the classification of several SNP-block pairs in a region to group chromosomes
in clusters with different recombination history. This package takes as input genotype phased data.
yocra3/LDclassifier documentation built on May 27, 2019, 12:13 p.m.
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Description
LDclassifier infers recombination history based on a mixture model that, given a pair of SNP-blocks, separates chromosomes in two populations, one with high Linkage Disequilibrium (LD) and low recombination (linkage) and another with low LD and high recombination. The method use the classification of several SNP-block pairs in a region to group chromosomes in clusters with different recombination history. This package takes as input genotype phased data.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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