perform_SEM_model2eq: Run VT-SEM model 2eq

In yoki5348/VT_SEM: Vertical-Transmission Structural Equation Modeling (VT-SEM)

Description

Run VT-SEM model 2eq which assumes there is sequilibrium AM and latent polygenic genetic score(LGS)

Arguments

dat	Data frame which includes offsprings' phenotype value (Yo), parental phenotype values (Ym,Yp), haplotypic transmitted PGS from parents (Tm,Tp), and haplotypic non-transmitted PGS of parents (NTm,NTp)

dat,NTmlabel,Tmlabel,NTplabel,Tplabel,Ymlabel,Yplabel,Yolabel	Column names of NTm,Tm,NTp,Tp,Ym,Yp, and Yo.
max.cores	Assign the number of cores to run OpenMx.

Value

AFE.Fit	OpenMx objective which includes fitted results
result_summary	Summaries of fitted values of model 0

Author(s)

Yongkang Kim [e-mail], Jared Balbona, and Matthew C Keller

References

Kong, Augustine, et al. "The nature of nurture: Effects of parental genotypes." Science 359.6374 (2018): 424-428.

Examples

data(equil_exam)
model2eq=perform_SEM_model2eq(equil_exam,"NTMO","TMO","NTPO","TPO","YM","YP","Y")
summary(model2eq$AFE.Fit)
model2eq$result_summary

yoki5348/VT_SEM documentation built on July 24, 2021, 5:10 p.m.