cran-comments.md
In yonicd/lmmen: Linear Mixed Model Elastic Net

local OS X install, R 3.3.2
ubuntu 12.04 (on travis-ci), R 3.3.2
win-builder (devel and release)

0 errors | 0 warnings | 0 note

This is a new release.

This is a new release, so there are no reverse dependencies.

I have run R CMD check on the NUMBER downstream dependencies. ==> devtools::check(args = c('--as-cran'))

Updating lmmen documentation Loading lmmen Loading required package: lmmlasso Loading required package: emulator Loading required package: mvtnorm Loading required package: miscTools Loading required package: penalized Loading required package: survival

Welcome to penalized. For extended examples, see vignette("penalized"). Setting env vars -------------------------------------------------------------- CFLAGS : -Wall -pedantic CXXFLAGS: -Wall -pedantic Building lmmen ---------------------------------------------------------------- '/Library/Frameworks/R.framework/Resources/bin/R' --no-site-file --no-environ \ --no-save --no-restore --quiet CMD build '/Users/jonathans/projects/lmmen' \ --no-resave-data --no-manual

checking for file ‘/Users/jonathans/projects/lmmen/DESCRIPTION’ ... OK
preparing ‘lmmen’:
checking DESCRIPTION meta-information ... OK
checking for LF line-endings in source and make files
checking for empty or unneeded directories Removed empty directory ‘lmmen/.Rd2pdf52030’
building ‘lmmen_1.0.tar.gz’

Setting env vars -------------------------------------------------------------- R_CHECK_CRAN_INCOMING : FALSE R_CHECK_FORCE_SUGGESTS: FALSE Checking lmmen ---------------------------------------------------------------- '/Library/Frameworks/R.framework/Resources/bin/R' --no-site-file --no-environ \ --no-save --no-restore --quiet CMD check \ '/var/folders/4_/xhs9__yd49l4v4j4wdg9f0wr0000gp/T//Rtmpvf9Xby/lmmen_1.0.tar.gz' \ --as-cran --timings --as-cran --no-manual

using log directory ‘/Users/jonathans/projects/lmmen.Rcheck’
using R version 3.3.2 (2016-10-31)
using platform: x86_64-apple-darwin13.4.0 (64-bit)
using session charset: UTF-8
using options ‘--no-manual --as-cran’
checking for file ‘lmmen/DESCRIPTION’ ... OK
this is package ‘lmmen’ version ‘1.0’
package encoding: UTF-8
checking package namespace information ... OK
checking package dependencies ... OK
checking if this is a source package ... OK
checking if there is a namespace ... OK
checking for executable files ... OK
checking for hidden files and directories ... OK
checking for portable file names ... OK
checking for sufficient/correct file permissions ... OK
checking whether package ‘lmmen’ can be installed ... OK
checking installed package size ... OK
checking package directory ... OK
checking DESCRIPTION meta-information ... OK
checking top-level files ... OK
checking for left-over files ... OK
checking index information ... OK
checking package subdirectories ... OK
checking R files for non-ASCII characters ... OK
checking R files for syntax errors ... OK
checking whether the package can be loaded ... OK
checking whether the package can be loaded with stated dependencies ... OK
checking whether the package can be unloaded cleanly ... OK
checking whether the namespace can be loaded with stated dependencies ... OK
checking whether the namespace can be unloaded cleanly ... OK
checking dependencies in R code ... OK
checking S3 generic/method consistency ... OK
checking replacement functions ... OK
checking foreign function calls ... OK
checking R code for possible problems ... OK
checking Rd files ... OK
checking Rd metadata ... OK
checking Rd line widths ... OK
checking Rd cross-references ... OK
checking for missing documentation entries ... OK
checking for code/documentation mismatches ... OK
checking Rd \usage sections ... OK
checking Rd contents ... OK
checking for unstated dependencies in examples ... OK
checking examples ... OK Examples with CPU or elapsed time > 5s user system elapsed lmmen 4.357 0.36 5.431 ** found \donttest examples: check also with --run-donttest
DONE Status: OK