gfplots: main function of gfplots packages

In ytdai/gfplots: Interactive visualization function of gene mutations and fusions

Description

gfplots is an useful package to visualize gene fusions and mutations. The defaluse annotation database is ENSEMBL

Usage

gfplots(obj, type = c("mutation", "fusion"), edb, output.dir = "./gfplots",
  verbose = FALSE, reverse = T, coding.only = T)

Arguments

obj	an list object. Contains all plot parameter
type	a character. Plot type, "mutation" or "fusion"
edb	an S4 object. EnsDb.Hsapiens.v75 or EnsDb.Hsapiens.v86
verbose	logical.
reverse	logical. If reverse is TRUE, genes in the negative chain will be reversed

Details

gfplots packages

Author(s)

Yuting Dai

ytdai/gfplots documentation built on May 23, 2019, 4:06 a.m.