yuanjing-ma/normtestpackage: The package can be used to normalize metagenomics data and perform two-stage differential abundance test

We introduce a novel framework for di↵erential abundance analysis in sparse ultrahigh-dimensional marker gene microbiome data. Our methodology relies on a network-based normalization technique and a two stage zero-inflated mixture count regression model that can take into consideration under-sampling and over-dispersion.

Getting started

Package details

Maintainer
LicenseWhat license is it under?
Version0.0.0.9000
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("devtools")
library(devtools)
install_github("yuanjing-ma/normtestpackage")
yuanjing-ma/normtestpackage documentation built on Dec. 18, 2018, 12:06 p.m.