init: Initialize DESSERT

In yub18/DESSERT: Differential Analysis of RNA Structure Probing Experiments at Nucleotide Resolution: Uncovering Regulatory Functions of RNA Structure

Initialize DESSERT

Description

Initialize with optional quality control.

Usage

init(r, qc_ctrl = FALSE, ncores = "auto")

Arguments

r	A list of reactivities of two conditions.
qc_ctrl	Quality control settings. See "Details".
ncores	Number of cores for parallel computation. Automatically determined by default.

Details

Set qc_ctrl = FALSE to skip QC. Otherwise, qc_ctrl should be a list with components n_trim_tail and bad_sites. n_trim_tail nucleotide positions in the tail of each transcript will be trimmed. Nucleotide positions in bad_sites will be removed.

Transcripts are cut into segments with length not exceeding 100 nt.

Value

Initialized reactivities.

yub18/DESSERT documentation built on Nov. 5, 2024, 2:36 a.m.