init: Initialize DESSERT
In yub18/DESSERT: Differential Analysis of RNA Structure Probing Experiments at Nucleotide Resolution: Uncovering Regulatory Functions of RNA Structure
init R Documentation
Initialize DESSERT
Description
Initialize with optional quality control.
Usage
init(r, qc_ctrl = FALSE, ncores = "auto")
Arguments
r
A list of reactivities of two conditions.
qc_ctrl
Quality control settings. See "Details".
ncores
Number of cores for parallel computation. Automatically determined by default.
Details
Set qc_ctrl = FALSE to skip QC. Otherwise, qc_ctrl should be a list
with components n_trim_tail and bad_sites. n_trim_tail nucleotide
positions in the tail of each transcript will be trimmed. Nucleotide positions in
bad_sites will be removed.
Transcripts are cut into segments with length not exceeding 100 nt.
Value
Initialized reactivities.
yub18/DESSERT documentation built on June 2, 2025, 12:13 a.m.
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| init | R Documentation |
Initialize DESSERT
Description
Initialize with optional quality control.
Usage
init(r, qc_ctrl = FALSE, ncores = "auto")
Arguments
r |
A list of reactivities of two conditions. |
qc_ctrl |
Quality control settings. See "Details". |
ncores |
Number of cores for parallel computation. Automatically determined by default. |
Details
Set qc_ctrl = FALSE to skip QC. Otherwise, qc_ctrl should be a list
with components n_trim_tail and bad_sites. n_trim_tail nucleotide
positions in the tail of each transcript will be trimmed. Nucleotide positions in
bad_sites will be removed.
Transcripts are cut into segments with length not exceeding 100 nt.
Value
Initialized reactivities.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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