scan: Scan to identify structurally variable regions (SVRs)
In yub18/DESSERT: Differential Analysis of RNA Structure Probing Experiments at Nucleotide Resolution: Uncovering Regulatory Functions of RNA Structure
scan R Documentation
Scan to identify structurally variable regions (SVRs)
Description
This function detects structurally variable regions in nucleotide resolution and
controls family-wise error rate.
Usage
scan(r, seed, alpha = 0.05, N = 1000, ncores = "auto")
Arguments
r
Initialized reactivity from init or normalized reactivity
from normalize.
seed
Random seed for reproducible results.
alpha
Significance level.
N
Number of replications in Monte Carlo sampling.
ncores
Number of cores to use for parallel computation. Automatically determined
by default.
Value
A list with each element corresponding to a transcript. svr is
SVRs with significance score P. scan includes the start and stop positions
of all scanned segments.
yub18/DESSERT documentation built on June 2, 2025, 12:13 a.m.
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| scan | R Documentation |
Scan to identify structurally variable regions (SVRs)
Description
This function detects structurally variable regions in nucleotide resolution and controls family-wise error rate.
Usage
scan(r, seed, alpha = 0.05, N = 1000, ncores = "auto")
Arguments
r |
Initialized reactivity from |
seed |
Random seed for reproducible results. |
alpha |
Significance level. |
N |
Number of replications in Monte Carlo sampling. |
ncores |
Number of cores to use for parallel computation. Automatically determined by default. |
Value
A list with each element corresponding to a transcript. svr is
SVRs with significance score P. scan includes the start and stop positions
of all scanned segments.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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