getupload | R Documentation |
Get the csv files from xcmsset/XCMSnExp/list object
getupload(
xset,
method = "medret",
value = "into",
name = "Peaklist",
type = "m",
mzdigit = 4,
rtdigit = 1
)
xset |
the xcmsset/XCMSnExp/list object which you want to submitted to Metaboanalyst |
method |
parameter for groupval function |
value |
parameter for groupval function |
name |
file name |
type |
m means Metaboanalyst, a means xMSannotator, o means full information csv |
mzdigit |
m/z digits of row names of data frame |
rtdigit |
retention time digits of row names of data frame |
dataframe with data needed for Metaboanalyst/xMSannotator/pmd if your want to perform local analysis.
getdata
, getmzrt
## Not run:
library(faahKO)
cdfpath <- system.file('cdf', package = 'faahKO')
xset <- getdata(cdfpath, pmethod = ' ')
getupload(xset)
## End(Not run)
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