Description Usage Arguments Details Author(s)
Modified version of the EIC plot function in apLCMS
1 2 |
aligned |
Rda object from apLCMS |
rows |
feature row indices eg: c(10,35) |
colors |
color vector eg: c("red","green") |
transform |
Tranformation method eg: "none", "log", "sqrt", or "cuberoot" |
subset |
subset of profiles for which to plot the EICs eg: c(1:6) |
minrt |
minimum retention limit in EIC plot eg:30 |
maxrt |
maximum retention time limit in EIC plot eg: 300 |
min.run |
same as apLCMS.align |
min.pres |
same as apLCMS.align |
max.spline.time.points |
Maximum number of time points to use for interpolation spline eg: 1000 |
This function is modified version of the EIC.plot function in apLCMS. Users can define the time range for plotting EICs.
Karan Uppal <kuppal2@emory.edu>; Tianwei Yu
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