METexprplot: Gene Expression Plot of Selected Gene Module with Its...

In yunzhang813/rGTExNetwork: Co-Expression Network Analysis on GTEx Data

Description

Plot the expression data of genes in the selected gene module. The module eigengene and its correlated trait variable are also plotted in the same plot.

Usage

METexprplot(MEs, trait, MEcolor, datExpr, moduleColors, ...)

Arguments

MEs	Data frame of module eigengenes. Eigengenes in columns and samples in rows.
trait	Data frame of phenotype trait variable(s). Phenotype trait variable(s) in column(s) and samples in rows.
MEcolor	Color of selected gene module. Should be an element in moduleColors.
datExpr	Gene expression data matrix or data frame of all genes. Genes in columns and samples in rows.
moduleColors	Vector of module colors of all genes in datExpr. Length should equal to number of columns in datExpr.
...	Additional arguments used in pheatmap.

Value

Heatmap plot.

Author(s)

Yun Zhang

yunzhang813/rGTExNetwork documentation built on May 4, 2019, 7:45 p.m.