lungData: Preprocessed Data from Lung Tissue

In yunzhang813/rGTExNetwork: Co-Expression Network Analysis on GTEx Data

Description

The preprocessed gene expression data for lung tissue. 1. Do variance-stabilizing transformation. 2. Filter out low count and small variation genes, using the function in our package geneFilter(original-vst-dat, mean.thred = 5, sd.thred = 2).

Usage

data(lungData)

Format

lungData

The preprocessed and filtered data. It contains 175 genes (in columns) and 133 samples (in rows).

Source

The Genotype Tissue Expression (GTEx) project: http://www.gtexportal.org/home/

Examples

data(lungData)

datExpr <- lungData
nGenes <- ncol(datExpr)
nSamples <- nrow(datExpr)

yunzhang813/rGTExNetwork documentation built on May 4, 2019, 7:45 p.m.