segcontour: Displays label contours in an MR image
In yupingikub/IKUB: Region-Based MR Brain Images Analysis

Description Usage Arguments Details Value

Displays one or more label contours for one or more slices in an MR image.

segcontour(
  filename_MR,
  filename_seg,
  labelnametibble,
  slice_no,
  target_label,
  anatomical_plane = 3,
  rowno = 1,
  colno = 1
)

`filename_MR`	A NIfTI-file of an MR image
`filename_seg`	A NIfTI-file of segmentation
`labelnametibble`	A label name tibble with correct format and unique columns. First column of the label name tibble must contain an integer label number and second column must contain a label name string. Label numbers and label names must be unique.
`slice_no`	One or more slice numbers for which label contours are to be displayed.
`target_label`	One or more label numbers for which label contours are to be displayed.
`anatomical_plane`	1 for coronal plane, 2 for sagittal plane and 3 for transverse plane. Default is 3.
`rowno`	Number of rows for showing images. Default is 1.
`colno`	Number of columns for showing images. Default is 1.

Displays one or more label contours for one or more slices in an MR image for given label numbers. Contours lie on the edge of regions.

One or more MR images with label contours for slice(s). A legend for label contours with label names. Only contours which are in the label name tibble and input label numbers will be displayed in the result.

yupingikub/IKUB documentation built on Dec. 23, 2021, 8:20 p.m.