Man pages for yzheng74/permseq
Mapping protein-DNA interactions in highly repetitive regions of the genomes with prior-enhanced read mapping
| permseq_ext-package | Mapping protein-DNA interactions in highly repetitive regions... |
| priorClass | An S4 "Prior" class containing prior information for the... |
| priorGenerate | Generate prior for ChIP-seq alignment. |
| priorHistone_init | Process histone ChIP-seq dataset to build the prior without... |
| priorHistone_multi | Process Histone data to cluster positions. |
| priorMethods | "Prior" class methods |
| priorProcess | Process DNase-seq (and histone ChIP-seq) datasets |
| readAllocate | Allocate ChIP-seq reads |
