Description Usage Arguments See Also Examples
Get the number of subtaxa per taxon.
1 |
x |
The object to get subtaxa for, such as a taxonomy object. |
subset |
The subset of the tree to search. Can be indexes or names. |
max_depth |
The number of ranks to traverse. For example, |
include |
If |
Other subtaxa functions:
subtaxa()
1 2 3 4 5 6 7 8 9 10 11 12 13 | # Generate example data
x <- taxonomy(c('Carnivora', 'Felidae', 'Panthera', 'Panthera leo',
'Panthera tigris', 'Ursidae', 'Ursus', 'Ursus arctos'),
supertaxa = c(NA, 1, 2, 3, 3, 1, 6, 7))
# Find number of subtaxa (including subtaxa of subtaxa, etc)
n_subtaxa(x)
# Find the number of subtaxa one rank below each taxon
n_subtaxa(x, max_depth = 1)
# Only return data for some taxa (faster than subsetting the whole result)
n_subtaxa(x, subset = 1:3)
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