alleles2genotypes: Convert Alleles to Genotypes (hierfstat format)
In zakrobinson/RLDNe: A Convenient R Interface For NeEstimator V2.1
Description
Usage
Arguments
Value
Author(s)
Examples
View source: R/alleles2genotypes.R
Description
A function that will return a data frame in genotype per column format from a data frame in allele per column format.
Usage
1
alleles2genotypes(df, allele_cols, allelesAsIntegers = TRUE)
Arguments
df
Data frame that contains genotypic data and metadata
allele_cols
Numeric column identifiers of loci
allelesAsIntegers
For alleles with zeros use FALSE. If FALSE this will eliminate the loss of leading zeros, but will not be usable in 'hierfstat'. When TRUE the genotypes are converted to integers for 'hierfstat' package.
Value
Data frame in genotype per column format
Author(s)
Zak Robinson, Contact: zachary.robinson(at)umontana.com
Examples
1
2
3
data("wgp_example_2col")
genotypes<-alleles2genotypes(df=wgp_example_2col,allele_cols = 3:ncol(wgp_example_2col),
allelesAsIntegers=TRUE)
zakrobinson/RLDNe documentation built on April 12, 2021, 1:50 p.m.
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Description Usage Arguments Value Author(s) Examples
View source: R/alleles2genotypes.R
Description
A function that will return a data frame in genotype per column format from a data frame in allele per column format.
Usage
1 | alleles2genotypes(df, allele_cols, allelesAsIntegers = TRUE)
|
Arguments
df |
Data frame that contains genotypic data and metadata |
allele_cols |
Numeric column identifiers of loci |
allelesAsIntegers |
For alleles with zeros use FALSE. If FALSE this will eliminate the loss of leading zeros, but will not be usable in 'hierfstat'. When TRUE the genotypes are converted to integers for 'hierfstat' package. |
Value
Data frame in genotype per column format
Author(s)
Zak Robinson, Contact: zachary.robinson(at)umontana.com
Examples
1 2 3 | data("wgp_example_2col")
genotypes<-alleles2genotypes(df=wgp_example_2col,allele_cols = 3:ncol(wgp_example_2col),
allelesAsIntegers=TRUE)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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