exportGenePop_RLDNe: Write Genepop file and create an RLDNe list object

In zakrobinson/RLDNe: A Convenient R Interface For NeEstimator V2.1

Write Genepop file and create an RLDNe list object

Description

Write Genepop file and create an RLDNe list object

Usage

exportGenePop_RLDNe(
  EFGLdata,
  filename = "genepop.gen",
  header = "genePopfile",
  pops = NULL,
  loci = NULL,
  useIndNames = FALSE
)

Arguments

filename	the name of the file to write
header	a string to use as the header line of the genepop file
pops	a vector of pops to include. If not specified, all pops are used.
loci	a vector of loci to include. If not specified, all loci are used.
useIndNames	TRUE to use individual names as sample identifiers. Otherwise, population names are used
x	an EFGLdata object

Value

writes a genepop-style file and returns a RLDNe_data object, which is just a list of length 5. The RLDNe_data object merely streamlines the use of subsequent functions by keeping track of file names and population/loci names.

Examples

data("wgp_example_2col")
colnames(wgp_example_2col) <- gsub("_(\\d)$",replacement = "\\.A\\1",colnames(wgp_example_2col))
efgl <- readInData(wgp_example_2col,genotypeStart = 3,pedigreeColumn = 1,nameColumn = 2)
rldne <- exportGenePop_RLDNe(EFGLdata = efgl)

zakrobinson/RLDNe documentation built on Oct. 24, 2024, 5:37 p.m.