jbplot_summary: jbplot_summary()

In zanbi/jabbamodel-JABBA: Just Another Bayesian Biomass Assessment

Description

Compares B, F, BBmsy, FFmsy, BB0 and SP for various model scanarios that have to be saved as rdata

Usage

jbplot_summary(
  scenarios = NULL,
  assessment = NULL,
  mod.path = getwd(),
  plotCIs = TRUE,
  prefix = "Summary",
  save.summary = FALSE,
  output.dir = getwd(),
  as.png = FALSE,
  single.plots = FALSE,
  width = NULL,
  height = NULL,
  Xlim = NULL,
  cols = NULL,
  legend.loc = "topright",
  legend.cex = 0.8,
  legend.add = TRUE,
  plot.cex = 0.8
)

Arguments

scenarios	Names of model scenarios to compare
assessment	Name of assessment as specified in jbinput
mod.path	Directory of saved model runs or vector
plotCIs	Plot Credibilty Interval
prefix	Plot name specifier
save.summary	option to save a summary of all loaded model runs
output.dir	directory to save plots
as.png	save as png file of TRUE
single.plots	if TRUE plot invidual fits else make multiplot
width	plot width
height	plot hight
Xlim	allows to "zoom-in" requires speficiation Xlim=c(first.yr,last.yr)
cols	option to add colour palette
legend.loc	location of legend
legend.cex	size of legend
legend.add	show legend
plot.cex	cex setting in par()

zanbi/jabbamodel-JABBA documentation built on June 27, 2020, 12:23 a.m.