restrict: restrict a landmark config or mesh to probabilistic bounds...

In zarquon42b/mesheR: Meshing Operations on Triangular Meshes

restrict a landmark config or mesh to probabilistic bounds from a sample of landmarks/vertices

Description

restrict a landmark config or mesh to probabilistic bounds from a sample of landmarks/vertices

Usage

restrict(
  x,
  model,
  sd = 3,
  maxVar = 95,
  scale = FALSE,
  nPC = NULL,
  probab = FALSE,
  reference = NULL
)

## S3 method for class 'mesh3d'
restrict(
  x,
  model,
  sd = 3,
  maxVar = 95,
  scale = FALSE,
  nPC = NULL,
  probab = FALSE,
  reference = NULL
)

## S3 method for class 'matrix'
restrict(
  x,
  model,
  sd = 3,
  maxVar = 95,
  scale = FALSE,
  nPC = NULL,
  probab = FALSE,
  reference = NULL
)

Arguments

x	matrix or triangular mesh of class "mesh3d"
model	object of class "nosymproc" (output from procSym run on a set of corresponding landmarks/vertices), serving as a priori knowledge about vertex/landmark distribution.
sd	standard deviation of PCscores defining boundaries
maxVar	percentage to be explained by the PCs used for the restriction. E.g. if you want to include PCs explaining 95% of the variance, set maxVar=95.
scale	logical: if FALSE, configuration will be restricted within a probablistic hypercube, otherwise Chi-Square distribution will be used.
nPC	number of PCs used in restricting (overrides maxVar)
probab	if TRUE only the probability will be returned.
reference	integer vector specifiying those landmarks that should be set to meanshape

Value

restricted landmarks/mesh

zarquon42b/mesheR documentation built on Jan. 28, 2024, 2:17 p.m.