phclust_plot: Plot the hierarchical cluster significance tree

In zbwrnz/parkcluster: Park's Cluster Significance Algorithm

Description

Plot the hierarchical cluster significance tree

Usage

phclust_plot(x, pv = NULL, group = NULL, cutoff = 1, show.pval = TRUE,
  ...)

Arguments

x	A data.frame, matrix, or hclust object
pv	A vector of p-values, an output of phclust_pvalues
group	A factor defining a hypothesized group, these groups will be colored on the tree, but will not affect the main algorithm
cutoff	Minimum p-value required to resolved a branch
show.pval	Whether to show the branch p-values on the tree
...	Arguments that will be passed to phclust_pvalues (ignored if pv is given)

Value

A tree plot

Examples

phclust_plot(cars)
phclust_plot(iris[1:3], group=iris$Species, cutoff=0.1, nperm=10)

zbwrnz/parkcluster documentation built on May 4, 2019, 9:12 p.m.