Description Usage Arguments Value Examples
Plot the hierarchical cluster significance tree
1 2 |
x |
A data.frame, matrix, or hclust object |
pv |
A vector of p-values, an output of phclust_pvalues |
group |
A factor defining a hypothesized group, these groups will be colored on the tree, but will not affect the main algorithm |
cutoff |
Minimum p-value required to resolved a branch |
show.pval |
Whether to show the branch p-values on the tree |
... |
Arguments that will be passed to phclust_pvalues (ignored if pv is given) |
A tree plot
1 2 | phclust_plot(cars)
phclust_plot(iris[1:3], group=iris$Species, cutoff=0.1, nperm=10)
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