.Rbuildignore
.gitignore
DESCRIPTION
LICENSE
LICENSE.md
NAMESPACE
R/RcppExports.R
R/RcppML.R
R/aml.R
R/bipartiteMatch.R
R/bipartition.R
R/cosine.R
R/crossValidate.R
R/dclust.R
R/hawaiibirds.R
R/lnmf.R
R/movielens.R
R/nmf.R
R/nmf_methods.R
R/nmf_plots.R
R/predict_nmf.r
R/random.R
R/simulateNMF.R
R/zzz.R
README.md
RcppML.Rproj
_pkgdown.yml
data/aml.rdata
data/hawaiibirds.rdata
data/movielens.rdata
docs/404.html
docs/LICENSE-text.html
docs/articles/getting_started.html
docs/articles/getting_started_files/figure-html/unnamed-chunk-13-1.png
docs/articles/getting_started_files/figure-html/unnamed-chunk-6-1.png
docs/articles/getting_started_files/figure-html/unnamed-chunk-7-1.png
docs/articles/index.html
docs/articles/robust_nmf.html
docs/authors.html
docs/deps/bootstrap-5.1.3/bootstrap.bundle.min.js
docs/deps/bootstrap-5.1.3/bootstrap.bundle.min.js.map
docs/deps/bootstrap-5.1.3/bootstrap.min.css
docs/deps/data-deps.txt
docs/deps/jquery-3.6.0/jquery-3.6.0.js
docs/deps/jquery-3.6.0/jquery-3.6.0.min.js
docs/deps/jquery-3.6.0/jquery-3.6.0.min.map
docs/index.html
docs/link.svg
docs/news.html
docs/news/index.html
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/RcppML.html
docs/reference/Rplot001.png
docs/reference/Rplot002.png
docs/reference/aml.html
docs/reference/bipartiteMatch.html
docs/reference/bipartition.html
docs/reference/biplot-nmf-method.html
docs/reference/cosine.html
docs/reference/crossValidate.html
docs/reference/dclust.html
docs/reference/hawaiibirds.html
docs/reference/index.html
docs/reference/movielens.html
docs/reference/mse.html
docs/reference/nmf.html
docs/reference/nnls.html
docs/reference/project.html
docs/reference/simulateNMF.html
docs/reference/summary-nmf-method.html
docs/search.json
docs/sitemap.xml
inst/include/EigenCore
inst/include/RcppEigen_bits.h
inst/include/RcppHungarian.h
inst/include/RcppML.h
inst/include/RcppML/SparseMatrix.h
inst/include/RcppML/bipartition.hpp
inst/include/RcppML/bits.hpp
inst/include/RcppML/cluster.hpp
inst/include/RcppML/distance.hpp
inst/include/RcppML/nmf.hpp
inst/include/RcppML/nnls.hpp
inst/include/RcppML/predict.hpp
inst/include/RcppML/rng.hpp
inst/include/RcppMLCommon.hpp
inst/include/src/Core/ArithmeticSequence.h
inst/include/src/Core/Array.h
inst/include/src/Core/ArrayBase.h
inst/include/src/Core/ArrayWrapper.h
inst/include/src/Core/Assign.h
inst/include/src/Core/AssignEvaluator.h
inst/include/src/Core/Assign_MKL.h
inst/include/src/Core/BandMatrix.h
inst/include/src/Core/Block.h
inst/include/src/Core/BooleanRedux.h
inst/include/src/Core/CommaInitializer.h
inst/include/src/Core/ConditionEstimator.h
inst/include/src/Core/CoreEvaluators.h
inst/include/src/Core/CoreIterators.h
inst/include/src/Core/CwiseBinaryOp.h
inst/include/src/Core/CwiseNullaryOp.h
inst/include/src/Core/CwiseTernaryOp.h
inst/include/src/Core/CwiseUnaryOp.h
inst/include/src/Core/CwiseUnaryView.h
inst/include/src/Core/DenseBase.h
inst/include/src/Core/DenseCoeffsBase.h
inst/include/src/Core/DenseStorage.h
inst/include/src/Core/Diagonal.h
inst/include/src/Core/DiagonalMatrix.h
inst/include/src/Core/DiagonalProduct.h
inst/include/src/Core/Dot.h
inst/include/src/Core/EigenBase.h
inst/include/src/Core/ForceAlignedAccess.h
inst/include/src/Core/Fuzzy.h
inst/include/src/Core/GeneralProduct.h
inst/include/src/Core/GenericPacketMath.h
inst/include/src/Core/GlobalFunctions.h
inst/include/src/Core/IO.h
inst/include/src/Core/IndexedView.h
inst/include/src/Core/Inverse.h
inst/include/src/Core/Map.h
inst/include/src/Core/MapBase.h
inst/include/src/Core/MathFunctions.h
inst/include/src/Core/MathFunctionsImpl.h
inst/include/src/Core/Matrix.h
inst/include/src/Core/MatrixBase.h
inst/include/src/Core/NestByValue.h
inst/include/src/Core/NoAlias.h
inst/include/src/Core/NumTraits.h
inst/include/src/Core/PartialReduxEvaluator.h
inst/include/src/Core/PermutationMatrix.h
inst/include/src/Core/PlainObjectBase.h
inst/include/src/Core/Product.h
inst/include/src/Core/ProductEvaluators.h
inst/include/src/Core/Random.h
inst/include/src/Core/Redux.h
inst/include/src/Core/Ref.h
inst/include/src/Core/Replicate.h
inst/include/src/Core/Reshaped.h
inst/include/src/Core/ReturnByValue.h
inst/include/src/Core/Reverse.h
inst/include/src/Core/Select.h
inst/include/src/Core/SelfAdjointView.h
inst/include/src/Core/SelfCwiseBinaryOp.h
inst/include/src/Core/Solve.h
inst/include/src/Core/SolveTriangular.h
inst/include/src/Core/SolverBase.h
inst/include/src/Core/StableNorm.h
inst/include/src/Core/StlIterators.h
inst/include/src/Core/Stride.h
inst/include/src/Core/Swap.h
inst/include/src/Core/Transpose.h
inst/include/src/Core/Transpositions.h
inst/include/src/Core/TriangularMatrix.h
inst/include/src/Core/VectorBlock.h
inst/include/src/Core/VectorwiseOp.h
inst/include/src/Core/Visitor.h
inst/include/src/Core/arch/AVX/Complex.h
inst/include/src/Core/arch/AVX/MathFunctions.h
inst/include/src/Core/arch/AVX/PacketMath.h
inst/include/src/Core/arch/AVX/TypeCasting.h
inst/include/src/Core/arch/AVX512/Complex.h
inst/include/src/Core/arch/AVX512/MathFunctions.h
inst/include/src/Core/arch/AVX512/PacketMath.h
inst/include/src/Core/arch/AVX512/TypeCasting.h
inst/include/src/Core/arch/AltiVec/Complex.h
inst/include/src/Core/arch/AltiVec/MathFunctions.h
inst/include/src/Core/arch/AltiVec/MatrixProduct.h
inst/include/src/Core/arch/AltiVec/MatrixProductCommon.h
inst/include/src/Core/arch/AltiVec/MatrixProductMMA.h
inst/include/src/Core/arch/AltiVec/PacketMath.h
inst/include/src/Core/arch/CUDA/Complex.h
inst/include/src/Core/arch/Default/BFloat16.h
inst/include/src/Core/arch/Default/ConjHelper.h
inst/include/src/Core/arch/Default/GenericPacketMathFunctions.h
inst/include/src/Core/arch/Default/GenericPacketMathFunctionsFwd.h
inst/include/src/Core/arch/Default/Half.h
inst/include/src/Core/arch/Default/Settings.h
inst/include/src/Core/arch/Default/TypeCasting.h
inst/include/src/Core/arch/GPU/MathFunctions.h
inst/include/src/Core/arch/GPU/PacketMath.h
inst/include/src/Core/arch/GPU/TypeCasting.h
inst/include/src/Core/arch/HIP/hcc/math_constants.h
inst/include/src/Core/arch/MSA/Complex.h
inst/include/src/Core/arch/MSA/MathFunctions.h
inst/include/src/Core/arch/MSA/PacketMath.h
inst/include/src/Core/arch/NEON/Complex.h
inst/include/src/Core/arch/NEON/GeneralBlockPanelKernel.h
inst/include/src/Core/arch/NEON/MathFunctions.h
inst/include/src/Core/arch/NEON/PacketMath.h
inst/include/src/Core/arch/NEON/TypeCasting.h
inst/include/src/Core/arch/SSE/Complex.h
inst/include/src/Core/arch/SSE/MathFunctions.h
inst/include/src/Core/arch/SSE/PacketMath.h
inst/include/src/Core/arch/SSE/TypeCasting.h
inst/include/src/Core/arch/SVE/MathFunctions.h
inst/include/src/Core/arch/SVE/PacketMath.h
inst/include/src/Core/arch/SVE/TypeCasting.h
inst/include/src/Core/arch/SYCL/InteropHeaders.h
inst/include/src/Core/arch/SYCL/MathFunctions.h
inst/include/src/Core/arch/SYCL/PacketMath.h
inst/include/src/Core/arch/SYCL/SyclMemoryModel.h
inst/include/src/Core/arch/SYCL/TypeCasting.h
inst/include/src/Core/arch/ZVector/Complex.h
inst/include/src/Core/arch/ZVector/MathFunctions.h
inst/include/src/Core/arch/ZVector/PacketMath.h
inst/include/src/Core/functors/AssignmentFunctors.h
inst/include/src/Core/functors/BinaryFunctors.h
inst/include/src/Core/functors/NullaryFunctors.h
inst/include/src/Core/functors/StlFunctors.h
inst/include/src/Core/functors/TernaryFunctors.h
inst/include/src/Core/functors/UnaryFunctors.h
inst/include/src/Core/products/GeneralBlockPanelKernel.h
inst/include/src/Core/products/GeneralMatrixMatrix.h
inst/include/src/Core/products/GeneralMatrixMatrixTriangular.h
inst/include/src/Core/products/GeneralMatrixMatrixTriangular_BLAS.h
inst/include/src/Core/products/GeneralMatrixMatrix_BLAS.h
inst/include/src/Core/products/GeneralMatrixVector.h
inst/include/src/Core/products/GeneralMatrixVector_BLAS.h
inst/include/src/Core/products/Parallelizer.h
inst/include/src/Core/products/SelfadjointMatrixMatrix.h
inst/include/src/Core/products/SelfadjointMatrixMatrix_BLAS.h
inst/include/src/Core/products/SelfadjointMatrixVector.h
inst/include/src/Core/products/SelfadjointMatrixVector_BLAS.h
inst/include/src/Core/products/SelfadjointProduct.h
inst/include/src/Core/products/SelfadjointRank2Update.h
inst/include/src/Core/products/TriangularMatrixMatrix.h
inst/include/src/Core/products/TriangularMatrixMatrix_BLAS.h
inst/include/src/Core/products/TriangularMatrixVector.h
inst/include/src/Core/products/TriangularMatrixVector_BLAS.h
inst/include/src/Core/products/TriangularSolverMatrix.h
inst/include/src/Core/products/TriangularSolverMatrix_BLAS.h
inst/include/src/Core/products/TriangularSolverVector.h
inst/include/src/Core/test
inst/include/src/Core/util/BlasUtil.h
inst/include/src/Core/util/ConfigureVectorization.h
inst/include/src/Core/util/Constants.h
inst/include/src/Core/util/DisableStupidWarnings.h
inst/include/src/Core/util/ForwardDeclarations.h
inst/include/src/Core/util/IndexedViewHelper.h
inst/include/src/Core/util/IntegralConstant.h
inst/include/src/Core/util/MKL_support.h
inst/include/src/Core/util/Macros.h
inst/include/src/Core/util/Memory.h
inst/include/src/Core/util/Meta.h
inst/include/src/Core/util/NonMPL2.h
inst/include/src/Core/util/ReenableStupidWarnings.h
inst/include/src/Core/util/ReshapedHelper.h
inst/include/src/Core/util/StaticAssert.h
inst/include/src/Core/util/SymbolicIndex.h
inst/include/src/Core/util/XprHelper.h
inst/include/src/plugins/ArrayCwiseBinaryOps.h
inst/include/src/plugins/ArrayCwiseUnaryOps.h
inst/include/src/plugins/BlockMethods.h
inst/include/src/plugins/CommonCwiseBinaryOps.h
inst/include/src/plugins/CommonCwiseUnaryOps.h
inst/include/src/plugins/IndexedViewMethods.h
inst/include/src/plugins/MatrixCwiseBinaryOps.h
inst/include/src/plugins/MatrixCwiseUnaryOps.h
inst/include/src/plugins/ReshapedMethods.h
man/RcppML.Rd
man/align.Rd
man/align_models.Rd
man/aml.Rd
man/bipartiteMatch.Rd
man/bipartition.Rd
man/biplot-nmf-method.Rd
man/cosine.Rd
man/crossValidate.Rd
man/dclust.Rd
man/evaluate.Rd
man/hawaiibirds.Rd
man/lnmf.Rd
man/movielens.Rd
man/mse.Rd
man/nmf-class-methods.Rd
man/nmf.Rd
man/nnls.Rd
man/project.Rd
man/r_matrix.Rd
man/random.Rd
man/simulateNMF.Rd
man/sparsity.Rd
man/summary-nmf-method.Rd
news.md
src/Makevars
src/Makevars.win
src/RcppExports.cpp
src/RcppExports.o
src/RcppFunctions.cpp
src/bipartiteMatch.cpp
src/bipartiteMatch.o
tests/testthat.R
tests/testthat/test_bipartition.R
tests/testthat/test_dclust.R
tests/testthat/test_nmf.R
tests/testthat/test_nnls.R
vignettes/annotating_nmf_models.Rmd
vignettes/getting_started.Rmd
vignettes/robust_nmf.R
vignettes/robust_nmf.Rmd