calHTqPCR: Compare gene expression of sample pairs by limma method: FC...

In zgzhao/Xtools: Xtools: handy tools for daily data analysis

Description

Calculate and return major results of HTqPCR.

Usage

calHTqPCR(
  dt,
  ref.gene,
  comp.strings = NULL,
  comp.type = 1,
  norm.method = "deltaCt",
  verbose = FALSE
)

Arguments

dt	Data of qPCRset class, read with readDataHTqPCR function. Please refer to readDataHTqPCR function info.
ref.gene	String. Names of reference gene(s).
comp.strings	String of length 1. Compare stirng related to sample name(s).
comp.type	Integer. 1: single control; 2: paired compares.
norm.method	String. Default: del
verbose	pass to HTqPCR::normalizeCtData

Details

Return results includes d.norm, fold change and stats table.

Value

result: results of limmaCtData (list); contrast: contranst sample labels (named strings); d.norm: result of normalizeCtData.

Author(s)

ZG Zhao

zgzhao/Xtools documentation built on May 22, 2021, 3:37 a.m.