API for zh542370159/dropSplit
Automatically identify cell-containing and empty droplets for droplet-based scRNAseq data using dropSplit
| Global functions | |
|---|---|
| .CellEntropyPlot | Source code |
| .CellGiniPlot | Source code |
| .CellRedundancyPlot | Source code |
| .RankMSEPlot | Source code |
| .RankPlot | Source code |
| .averaging_transform | Source code |
| .nCountPlot | Source code |
| .nFeaturePlot | Source code |
| .rstest | Source code |
| CallCellRangerV2 | Man page Source code |
| CallCellRangerV3 | Man page Source code |
| CallEmptyDrops | Man page Source code |
| CalldropSplit | Source code |
| CallzUMIs | Man page Source code |
| CellCalling | Man page Source code |
| CellEfficiency | Man page Source code |
| CellEntropy | Man page Source code |
| CellEntropyPlot | Source code |
| CellGini | Man page Source code |
| CellGiniPlot | Source code |
| CellRedundancy | Man page Source code |
| CellRedundancyPlot | Source code |
| ImportancePlot | Man page Source code |
| QCplot | Man page Source code |
| RankMSE | Man page Source code |
| RankMSEPlot | Source code |
| RankPlot | Source code |
| compute_ambient_pvalues | Man page Source code |
| curvatureCalcluate | Man page Source code |
| defineScoreFun | Source code |
| dropSplit | Man page Source code |
| est_background_profile_sgt | Man page Source code |
| estimate_profile_sgt | Man page Source code |
| eval_multinomial_loglikelihoods | Man page Source code |
| filter_cellular_barcodes_ordmag | Source code |
| find_inflection | Man page Source code |
| find_nonambient_barcodes | Man page Source code |
| find_peaks | Man page Source code |
| find_within_ordmag | Source code |
| maxCellEntropy | Man page Source code |
| nCountPlot | Source code |
| nFeaturePlot | Source code |
| outliers | Man page Source code |
| sgt_proportions | Man page Source code |
| simCell | Source code |
| simComplexCounts | Man page Source code |
| simEmpty | Source code |
| simSimpleCounts | Man page Source code |
| simple_good_turing | Man page Source code |
| simulate_multinomial_loglikelihoods | Man page Source code |
| xgbOptimization | Man page Source code |
