CellCalling: Call cell-containg droplets using different methods.

In zh542370159/dropSplit: Automatically identify cell-containing and empty droplets for droplet-based scRNAseq data using dropSplit

Call cell-containg droplets using different methods.

Description

Call cell-containg droplets using different methods.

Usage

CellCalling(counts, method = "dropSplit", seed = 0, ...)

Arguments

counts	A matrix object or a dgCMatrix object which columns represent features and rows represent droplets.
method	A cell-calling method from the following options: dropSplit CellRangerV2 CellRangerV3 EmptyDrops zUMIs
seed	Random seed used in the function. Default is 0.
...	Arguments passed to the cell-calling method.

Value

A list including at least DataFrame named 'meta_info' which contains the final classification column named 'methodClass'.

Examples

counts <- simSimpleCounts()
result <- CellCalling(counts, method = "dropSplit")
head(result)

zh542370159/dropSplit documentation built on June 19, 2022, 2:49 p.m.