API for zhangh12/ARTP2
Pathway and Gene-Level Association Test
| Global functions | |
|---|---|
| .onAttach | Source code |
| ARTP2 | Man page |
| ARTP2-package | Man page |
| align.ambig.meta | Source code |
| align.ambig.snps | Source code |
| align.ambig.study | Source code |
| align.reference | Source code |
| ambig.check.data | Source code |
| ambig.snps | Source code |
| artp2 | Source code |
| artp2.chr | Source code |
| artp2.select.genes | Source code |
| assign.subject.id | Source code |
| check.misleading.factor | Source code |
| check.os | Source code |
| check.small.level | Source code |
| complete.sum.stat | Source code |
| convert.header | Source code |
| convert.method | Source code |
| cov.svd | Source code |
| create.formula | Source code |
| create.gene.cutpoint | Source code |
| create.group | Source code |
| create.pathway.cutpoint | Source code |
| create.sub.pathway | Source code |
| create.super.pathway | Source code |
| create.super.pathway.setup | Source code |
| create.yx | Source code |
| data | Man page |
| data.parse | Source code |
| data.subset | Source code |
| error.try | Source code |
| exclude.snps | Man page Source code |
| expand_pathway | Source code |
| extract.conflictive.snps | Source code |
| extract.position.information | Source code |
| extract.reference.allele | Source code |
| filter.ambig.snps | Source code |
| filter.conflictive.snps | Source code |
| filter.raw.geno | Source code |
| filter.reference.geno | Source code |
| find.marg.signal | Source code |
| find.snps.in.regions | Source code |
| gen.stat.miss | Source code |
| generate.normal.statistics | Source code |
| generate.pathway.pvalue.stat | Source code |
| geno | Man page |
| inflation | Man page Source code |
| input.type | Source code |
| load.file | Source code |
| load.pathway.definition | Source code |
| load.pathway.set | Source code |
| load.reference.allele | Source code |
| load.reference.geno | Source code |
| load.summary.files | Source code |
| load.summary.statistics | Source code |
| map.SNPs.to.genofiles | Source code |
| map.SNPs.to.plinkfiles | Source code |
| merge.setups | Source code |
| merge.stat | Source code |
| meta | Man page Source code |
| multiple.comparison.summaryData | Source code |
| multiple.pathways.setup | Source code |
| norm.stat.test | Source code |
| options | Man page |
| options.default | Man page Source code |
| options.setup | Source code |
| options.validation | Source code |
| parseDelimVec | Source code |
| pathway | Man page |
| rARTP | Man page Source code |
| rawData.dataframe.setup | Source code |
| rawData.genofiles.setup | Source code |
| rawData.plinkfiles.setup | Source code |
| read.bed | Man page Source code |
| recover.stat | Source code |
| recreate.pathway | Source code |
| ref.does | Man page |
| ref.geno | Man page |
| reference.type | Source code |
| reformat.reference.path | Source code |
| reformat.snps | Source code |
| remove.conflictive.snps | Source code |
| remove.const.covar | Source code |
| remove.redendant.covar | Source code |
| sARTP | Man page Source code |
| split.pathway | Source code |
| split.sum.stat | Source code |
| subj.id | Man page |
| summaryData.setup | Source code |
| test | Source code |
| tester | Source code |
| trim.deleted.snps | Source code |
| turn.off.SNP.filters | Source code |
| update.allele.info | Source code |
| update.deleted.genes | Source code |
| update.deleted.snps | Source code |
| update.direction | Source code |
| update.pathway.definition | Source code |
| update.raw.geno | Source code |
| update.ref.geno | Source code |
| update.ref.snps | Source code |
| update.setup | Source code |
| update.sf | Source code |
| update.sum.stat | Source code |
| validate.covar | Source code |
| validate.family | Source code |
| validate.genofiles | Source code |
| validate.lambda.rawData | Source code |
| validate.lambda.summaryData | Source code |
| validate.outcome | Source code |
| validate.pathway.definition | Source code |
| validate.plinkfiles | Source code |
| validate.reference | Source code |
| validate.sample.size | Source code |
| validate.setup | Source code |
| validate.summary.files | Source code |
| validate.summary.input | Source code |
| warm.start | Man page Source code |
