createCohorts: Generate cohort

In zhangly811/MvDeconfounder: Deconfounder

Description

Generate cohort

Usage

createCohorts(
  connection,
  cdmDatabaseSchema,
  oracleTempSchema = NULL,
  vocabularyDatabaseSchema = cdmDatabaseSchema,
  cohortDatabaseSchema,
  targetCohortTable,
  createTargetCohortTable = TRUE,
  conditionConceptIds,
  measurementConceptId,
  observationWindowBefore,
  observationWindowAfter,
  drugWindow,
  targetCohortId
)

Arguments

connection	Connection to the database. An object of class connect as created by the connect function in the DatabaseConnector package.
cdmDatabaseSchema	A schema where OMOP CDM data are stored.
oracleTempSchema	A schema that can be used to create temp tables in when using Oracle.
vocabularyDatabaseSchema	A schema where vocabulary is stored
cohortDatabaseSchema	A schema where the cohort is stored
targetCohortTable	A string corresponds to the name of cohort table
createTargetCohortTable	A boolean that indicates whether the targetCohortTable will be created. Default TRUE.
conditionConceptIds	A list of condition concept IDs that correspond to the disease of interest.
measurementConceptId	A numeric of measurement concept ID
observationWindowBefore	An integer indicates the number of pre-treatment days used to look for pre-treatment measurement.
observationWindowAfter	An integer indicates the number of post-treatment days used to look for post-treatment measurement.
drugWindow	An integer indicates the number of post-treatment days during which drug exposure are also considered. Default is 0
targetCohortId	An integer of the cohort ID.

Details

This function generates cohort for the medical deconfounder (single outcome)

Value

Returns a string containing the rendered SQL.

zhangly811/MvDeconfounder documentation built on Jan. 21, 2021, 12:11 p.m.