generateData: Generate data
In zhangly811/MvDeconfounder: Deconfounder

Description Usage Arguments Details Value

View source: R/main.R

Generate data

generateData(
  connection,
  cdmDatabaseSchema,
  oracleTempSchema = NULL,
  vocabularyDatabaseSchema = cdmDatabaseSchema,
  cohortDatabaseSchema,
  targetCohortTable,
  drugExposureTable,
  measurementTable,
  conditionConceptIds,
  measurementConceptId,
  observationWindowBefore,
  observationWindowAfter,
  drugWindow,
  createTargetCohortTable = T,
  createTargetCohort = T,
  extractFeature = T,
  targetCohortId = NULL,
  dataFolder,
  drugFilename,
  measFilename
)

`connection`	Connection to the database. An object of class connect as created by the connect function in the DatabaseConnector package.
`cdmDatabaseSchema`	A schema where OMOP CDM data are stored.
`oracleTempSchema`	A schema that can be used to create temp tables in when using Oracle.
`vocabularyDatabaseSchema`	A schema where vocabulary is stored
`cohortDatabaseSchema`	A schema where the cohort is stored
`targetCohortTable`	A string corresponds to the name of the cohort table
`drugExposureTable`	A string corresponds to the name of the drug exposure table
`measurementTable`	A string corresponds to the name of the measurement table
`conditionConceptIds`	A list of condition concept IDs that correspond to the disease of interest.
`measurementConceptId`	A numeric of measurement concept ID
`observationWindowBefore`	An integer indicates the number of pre-treatment days used to look for pre-treatment measurement.
`observationWindowAfter`	An integer indicates the number of post-treatment days used to look for post-treatment measurement.
`drugWindow`	An integer indicates the number of post-treatment days during which drug exposure are also considered. Default is 0
`createTargetCohortTable`	A boolean that indicates whether the targetCohortTable will be created. Default TRUE.
`createTargetCohort`	A boolean that indicates whether to create the cohort. Default TRUE.
`extractFeature`	A boolean that indicates whether to extract features for the cohort. Default TRUE.
`targetCohortId`	An integer of the cohort ID.
`dataFolder`	A string indicates where output will be stored.
`drugFilename`	A string for the name of the table to store drug exposure.
`measFilename`	A string for the name of the table to store measurement.