zhengfj1994/MetEx
Targeted extraction from untargeted metabolomics dataset by using metabolomics database

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zhengfj1994/MetEx: Targeted extraction from untargeted metabolomics dataset by using metabolomics database
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Files in zhengfj1994/MetEx
Targeted extraction from untargeted metabolomics dataset by using metabolomics database

.Rbuildignore
.gitignore
DESCRIPTION
LICENSE
LICENSE.md
MetEx.Rproj
NAMESPACE
R/ClassicalAnnotation.R R/MetExAnnotation.R R/batchMS2Score.optimized.R R/dbImporter.R R/entropyCalculator.R R/exactMsp.R R/extracResFilter.R R/identifiedResFilter.R R/intEntropyCalculator.R R/list2dataframe.R R/mergeMetExResult.R R/mergems2.R R/ms1ms2Match.R R/ms2Score.R R/ms2ScoreSpectralEntropy.R R/peakDectAndEntroCal.R R/peakDetection.R R/peakGroup.R R/readMsp.R R/retentionTimeCalibration.R R/targetExtraction.optimized.R README.md
inst/extdata/MetExResult/MetExRes.csv
inst/extdata/database/MCS/MCSRT.Rda
inst/extdata/database/MetEx_MSMLS.xlsx
inst/extdata/mgf/example.mgf
inst/extdata/mzXML/example.mzXML
inst/extdata/peakTable/example.csv
inst/extdata/shinyApp/README.md inst/extdata/shinyApp/global.R inst/extdata/shinyApp/main/AnnotationFromPeakTable.server.R inst/extdata/shinyApp/main/AnnotationFromPeakTable.ui.R inst/extdata/shinyApp/main/ChromatographicSystems.server.R inst/extdata/shinyApp/main/ChromatographicSystems.ui.R inst/extdata/shinyApp/main/Database.download.server.R inst/extdata/shinyApp/main/Database.download.ui.R inst/extdata/shinyApp/main/Demo.data.ui.R inst/extdata/shinyApp/main/Help.ui.R inst/extdata/shinyApp/main/MetEx.mutiple.server.R inst/extdata/shinyApp/main/MetEx.mutiple.ui.R inst/extdata/shinyApp/main/MetEx.single.server.R inst/extdata/shinyApp/main/MetEx.single.ui.R inst/extdata/shinyApp/main/OtherSoftwareTools.ui.R inst/extdata/shinyApp/main/Update.ui.R inst/extdata/shinyApp/main/introduction.ui.R inst/extdata/shinyApp/main/mspReader.ui.R inst/extdata/shinyApp/server.R inst/extdata/shinyApp/ui.R
inst/extdata/shinyApp/www/Download_MetExApp.png
inst/extdata/shinyApp/www/Download_result.png
inst/extdata/shinyApp/www/Finished.png
inst/extdata/shinyApp/www/IS-for-tR-calibration.png
inst/extdata/shinyApp/www/MetExAppZip.png
inst/extdata/shinyApp/www/MetEx_icon.png
inst/extdata/shinyApp/www/MetEx_icon_2.png
inst/extdata/shinyApp/www/Offline-install-1.png
inst/extdata/shinyApp/www/Offline-install-2.png
inst/extdata/shinyApp/www/Offline-install-3.png
inst/extdata/shinyApp/www/Offline-install-4.png
inst/extdata/shinyApp/www/Page_MetEx.png
inst/extdata/shinyApp/www/Run_MetEx.png
inst/extdata/shinyApp/www/Screen-shot-of-Shiny-App.png
inst/extdata/shinyApp/www/The_workflow_of_MetEx.png
inst/extdata/shinyApp/www/Unzipped_MetExApp.png
inst/extdata/shinyApp/www/Webserver_MetEx.png
inst/extdata/shinyApp/www/Workflow-of-MetEx.png
inst/extdata/shinyApp/www/example-of-database.png
inst/extdata/shinyApp/www/flower_left.png
inst/extdata/shinyApp/www/flower_right.png
inst/extdata/shinyApp_web/README.md inst/extdata/shinyApp_web/global.R inst/extdata/shinyApp_web/main/AnnotationFromPeakTable.server.R inst/extdata/shinyApp_web/main/AnnotationFromPeakTable.ui.R inst/extdata/shinyApp_web/main/ChromatographicSystems.server.R inst/extdata/shinyApp_web/main/ChromatographicSystems.ui.R inst/extdata/shinyApp_web/main/Database.download.server.R inst/extdata/shinyApp_web/main/Database.download.ui.R inst/extdata/shinyApp_web/main/Demo.data.ui.R inst/extdata/shinyApp_web/main/Help.ui.R inst/extdata/shinyApp_web/main/MetEx.mutiple.server.R inst/extdata/shinyApp_web/main/MetEx.mutiple.ui.R inst/extdata/shinyApp_web/main/MetEx.single.server.R inst/extdata/shinyApp_web/main/MetEx.single.ui.R inst/extdata/shinyApp_web/main/OtherSoftwareTools.ui.R inst/extdata/shinyApp_web/main/Update.ui.R inst/extdata/shinyApp_web/main/introduction.ui.R inst/extdata/shinyApp_web/main/mspReader.ui.R inst/extdata/shinyApp_web/server.R inst/extdata/shinyApp_web/ui.R
inst/extdata/shinyApp_web/www/Download_MetExApp.png
inst/extdata/shinyApp_web/www/Download_result.png
inst/extdata/shinyApp_web/www/Finished.png
inst/extdata/shinyApp_web/www/IS-for-tR-calibration.png
inst/extdata/shinyApp_web/www/MetExAppZip.png
inst/extdata/shinyApp_web/www/MetEx_icon.png
inst/extdata/shinyApp_web/www/MetEx_icon_2.png
inst/extdata/shinyApp_web/www/Offline-install-1.png
inst/extdata/shinyApp_web/www/Offline-install-2.png
inst/extdata/shinyApp_web/www/Offline-install-3.png
inst/extdata/shinyApp_web/www/Offline-install-4.png
inst/extdata/shinyApp_web/www/Page_MetEx.png
inst/extdata/shinyApp_web/www/Run_MetEx.png
inst/extdata/shinyApp_web/www/Screen-shot-of-Shiny-App.png
inst/extdata/shinyApp_web/www/The_workflow_of_MetEx.png
inst/extdata/shinyApp_web/www/Unzipped_MetExApp.png
inst/extdata/shinyApp_web/www/Webserver_MetEx.png
inst/extdata/shinyApp_web/www/Workflow-of-MetEx.png
inst/extdata/shinyApp_web/www/example-of-database.png
inst/extdata/shinyApp_web/www/flower_left.png
inst/extdata/shinyApp_web/www/flower_right.png
inst/extdata/testData/MS2MatrixTest.rda
inst/extdata/testData/MetExAnnotationResList.Rda
inst/extdata/testData/batchMS2ScoreResult.Rda
inst/extdata/testData/dataPeakSheakTest.rda
inst/extdata/testData/dbDataTest.rda
inst/extdata/testData/eicDataTest.rda
inst/extdata/testData/mgfDataTest.rda
inst/extdata/testData/mgfMatrixTest.rda
inst/extdata/testData/ms1InfoQQQTest.rda
inst/extdata/testData/ms1InfoTest.rda
inst/extdata/testData/ms2ActTest.rda
inst/extdata/testData/ms2DBTest.rda
inst/extdata/testData/ms2ListTest.rda
inst/extdata/testData/mspDataTest.rda
inst/extdata/testData/targExtracResTest.rda
inst/extdata/trCalibration/IS-for-tR-calibration.xlsx
man/ClassicalAnnotation.Rd man/MetExAnnotation.Rd man/batchMS2Score.optimized.Rd man/dbImporter.Rd man/entropyCalculator.Rd man/exactMsp.Rd man/extracResFilter.Rd man/identifiedResFilter.Rd man/intEntropyCalculator.Rd man/list2dataframe.Rd man/mergeMetExResult.Rd man/mergems2.Rd man/ms1ms2Match.Rd man/ms2Score.Rd man/ms2ScoreSpectralEntropy.Rd man/peakDectAndEntroCal.Rd man/peakDetection.Rd man/peakGroup.Rd man/readMsp.Rd man/retentionTimeCalibration.Rd man/targetExtraction.optimized.Rd
screenshots/Download_MetExApp.png
screenshots/Download_result.png
screenshots/IS-for-tR-calibration.png
screenshots/Offline-install-1.png
screenshots/Offline-install-2.png
screenshots/Offline-install-3.png
screenshots/Offline-install-4.png
screenshots/Page_MetEx.png
screenshots/Run_MetEx.png
screenshots/Screen-shot-of-Shiny-App.png
screenshots/Unzipped_MetExApp.png
screenshots/Webserver_MetEx.png
screenshots/Workflow-of-MetEx.png
screenshots/example-of-database.png
zhengfj1994/MetEx documentation built on Nov. 19, 2023, 1:34 p.m.

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