write_model_Reg_Nest: Write '.bug' model file for regression model WITH nested...

In zhenkewu/baker: "Nested Partially Latent Class Models"

Write .bug model file for regression model WITH nested subclasses

Description

write_model_Reg_Nest automatically generates model file according to model_options; This is called within nplcm_fit_Reg_Nest.

Usage

write_model_Reg_Nest(
  Mobs,
  prior,
  cause_list,
  Eti_formula,
  FPR_formula,
  use_measurements,
  ppd = NULL,
  use_jags = FALSE
)

Arguments

Mobs	Measurement data in the form of data_nplcm
prior	Prior specification from model_options
cause_list	A list of latent status names (crucial for building templates; see make_template())
Eti_formula	Etiology regression formula; Check model_options$likelihood$Eti_formula.
FPR_formula	A list of FPR regression formula; check model_options$likelihood$FPR_formula
use_measurements	"BrS", or "SS"
ppd	Default is NULL; set to TRUE for posterior predictive checking
use_jags	Default is FALSE; set to TRUE if want to use JAGS for model fitting.

Value

a long character string to be written into .bug file.

See Also

insert_bugfile_chunk_noreg_meas for inserting .bug file chunk for measurements (plug-and-play.R); insert_bugfile_chunk_noreg_etiology for inserting .bug file chunk for distribution of latent status (etiology).

Other model generation functions: write_model_NoReg(), write_model_Reg_NoNest(), write_model_Reg_discrete_predictor_NoNest()

zhenkewu/baker documentation built on Feb. 7, 2024, 4:20 p.m.