summarize_latent_state_given_Q: Summarize individual latent state patterns given Q

In zhenkewu/rewind: Reconstructing Etiology with Binary Decomposition

Description

This function takes in posterior samples of individual latent states, orders latent states according to the rows of Q and output

• 1) the marginal probabilities of each individual's latent states being active and

• 2) the posterior samples of individual latent states (after ordering by row of Q and converting the binary codes to decimal numbers)

Usage

summarize_latent_state_given_Q(H_star_samp, z_samp, Q)

Arguments

H_star_samp	A latent state profile array with elements indexed by (pseudo-cluster, latent state, MCMC iteration for inference)
z_samp	A pseudo-cluster indicator matrix with elements indexed by (individual, MCMC iteration for inference)
Q	Q matrix; known but could have rows to be ordered

Value

• marg_prob the marginal probabilities of each individual's latent states being active

• H_pat_ordered_samp the posterior samples of individual latent states (after ordering by row of Q and converting the binary codes to decimal numbers)

zhenkewu/rewind documentation built on Sept. 9, 2020, 3:40 p.m.