Description Usage Arguments Examples
Gene Expression Signature Similarity based on Gene Set Enrichment Analysis
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dat |
gene rank matrix or data.frame |
top |
top genes selected |
type |
avg or max |
ncore |
the number of cores used |
verbose |
verbose |
1 2 3 4 5 | data(Psoriasis_Etanercept_LogFC)
Psoriasis_Etanercept_rank <- apply(-Psoriasis_Etanercept_LogFC, 2, rank)
sim <- scoreGsea(Psoriasis_Etanercept_rank, type="avg")
sim <- scoreGseam(Psoriasis_Etanercept_rank, type="avg", ncore=2)
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