gmt2list | R Documentation |
read Gene Matrix Transposed (gmt) file and output a list with the the first column as the names of items in the list. see Gene Matrix Transposed file format for more details.
gmt2list(annofile)
annofile |
a gmt file. Examples are from MSigDB Collections. A list of gene set could be find in the vignette of cogena |
a gmt list
gmtlist2file
anno <- "c2.cp.kegg.v7.01.symbols.gmt.xz"
annofile <- system.file("extdata", anno, package="cogena")
gl <- gmt2list(annofile)
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