Man pages for zhiyhu/CIDER
Meta-Clustering for Single-Cell Data Integration and Evaluation
| calculateDistMatOneModel | Calculate distance matrix with in one model |
| cosineSimilarityR | cosine similarity in R |
| downsampling | Downsampling cells |
| estimateProb | Estimate the empirical probability of whether two set of... |
| finalClustering | Final clustering step for meta-clustering |
| getDistMat | Calculate the Similarity Matrix |
| getGroupFit | Calculate IDER-based similarity between two groups |
| getIDEr | Compute IDER-based similarity |
| hdbscan.seurat | Initial clustering for evaluating integration |
| initialClustering | Initial clustering |
| measureSimilarity | Measure similarity between two vectors |
| Merge | Gather initial cluster names |
| mergeInitialClusters | Merge Initial Clusters |
| pancreas | Pancreatic scRNA-Seq data. |
| plotDistMat | Plot Similarity Matrix with pheatmap |
| plotHeatmap | Plot Heatmap for the IDER-based similarity matrix |
| plotNetwork | Plot Network Graph |
| scatterPlot | Scatterplot by a selected feature |
