calculateDistMatOneModel: Calculate distance matrix with in one model

In zhiyhu/CIDER: Meta-Clustering for Single-Cell Data Integration and Evaluation

Calculate distance matrix with in one model

Description

This function is called by 'getDistMat'.

Usage

calculateDistMatOneModel(
  matrix,
  metadata,
  verbose = TRUE,
  method = "voom",
  additional.variate = NULL
)

Arguments

matrix	The count matrix. Rows are genes/features and columns are samples/cells.
metadata	Data frame. Its rows should correspond to columns of the 'matrix' input.
verbose	Print the message and progress bar (default: TRUE)
method	Methods for DE analysis. Options: "voom" or "trend" (default)
additional.variate	additional variate to include into the linear model to regress out

Value

A similarity matrix

Author(s)

Zhiyuan Hu

See Also

This function is called by getDistMat

zhiyhu/CIDER documentation built on Feb. 4, 2025, 1:09 a.m.