bed_generator: Generate BED file for WGS dataset.

In zhouzilu/iCNV: Integrated Copy Number Variation detection

Description

Default position generated from USCS genome browser

Usage

bed_generator(chr = numeric(), hg = numeric(), start = NULL, end = NULL,
  by = 1000)

Arguments

chr	Specify the chromosome you want to generate. Must be of int from 1-22. Type integer.
hg	Specify the coordinate you want to generate from. Start and end position of hg19 and hg38 have been pre-implemented. Type integer.
start	The start position of your BED file. Default NULL
end	The end position of your BED file. Default NULL
by	The chunk of your DNA for each bin. Type integer. Default 1000.

Value

void

Examples

bed_generator(chr=22,hg=38)
bed_generator(22,38,5001,10000,by=500)

zhouzilu/iCNV documentation built on Feb. 16, 2020, 4:53 p.m.