output_list: Generate ouput list.

Description Usage Arguments Value Examples

View source: R/output_list_function.R

Description

Generate human readable output from result calculated by iCNV_detection function

Usage

1
output_list(icnv_res, sampleid = NULL, CN = 0, min_size = 0)

Arguments

icnv_res

CNV inference result. Output from iCNV_detection()

sampleid

the name of the sample, same order as the input

CN

An indicator variable with value 0,1 for whether exact copy number inferred in iCNV_detection. 0 no exact CN, 1 exact CN. Type integer. Default 0.

min_size

A integer which indicate the minimum length of the CNV you are interested in. This could remove super short CNVs due to noise. Type integer. Default 0. Recommend 1000.

Value

output CNV list of each individual

Examples

1
icnv.output <- output_list(icnv_res=icnv_res0,sampleid=sampname_qc, CN=0)

zhouzilu/iCNV documentation built on Feb. 16, 2020, 4:53 p.m.