Files in zijianni/SpotClean
SpotClean adjusts for spot swapping in spatial transcriptomics data
.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
NEWS.md
R/SpotClean-package.R
R/calculate_contamination_score.R
R/convert_to_seurat.R
R/create_slide.R
R/decontamination.R
R/keep_high_gene.R
R/mbrain_raw.R
R/read10x.R
R/visualize_heatmap.R
R/visualize_label.R
R/visualize_slide.R
README.md
data/mbrain_raw.rda
inst/CITATION
inst/extdata/V1_Adult_Mouse_Brain_spatial/scalefactors_json.json
inst/extdata/V1_Adult_Mouse_Brain_spatial/tissue_lowres_image.png
inst/extdata/V1_Adult_Mouse_Brain_spatial/tissue_positions_list.csv
man/ARCScore.Rd
man/ConvertToSeurat.Rd
man/CreateSlide.Rd
man/KeepHighGene.Rd
man/Read10x.Rd
man/SpotClean-package.Rd
man/SpotClean.Rd
man/VisualizeHeatmap.Rd
man/VisualizeLabel.Rd
man/VisualizeSlide.Rd
man/mbrain_raw.Rd
tests/spelling.R
tests/testthat.R
tests/testthat/test-calculate_contamination_score.R
tests/testthat/test-convert_to_seurat.R
tests/testthat/test-create_slide.R
tests/testthat/test-decontamination.R
tests/testthat/test-external_data.R
tests/testthat/test-keep_high_gene.R
tests/testthat/test-read10x.R
tests/testthat/test-visualize_heatmap.R
tests/testthat/test-visualize_label.R
tests/testthat/test-visualize_slide.R
vignettes/SpotClean.Rmd
