NEWS.md

In zijianni/SpotClean: SpotClean adjusts for spot swapping in spatial transcriptomics data

Updates

SpotClean 0.99.0

• Created initial github page.
• Created package.
• Created vignettes.
• Checked package... passed R CMD check and BiocCheck.
• Ready to submit.

SpotClean 0.99.1

• Fixed a bug due to genes with zero expression in tissue spots but positive expression in background spots.
• As a result, when creating the slide object, genes will be filtered by average expression in tissue spots, not all spots.

SpotClean 0.99.5

• Submitted to Bioconductor for review

SpotClean 0.99.8

• First round review

SpotClean 0.99.9

• Second round review

SpotClean 0.99.10

• Our paper is published in Nature Communications!

SpotClean 1.0.1

• Fixed a bug due to updated slots in SpatialExperiment objects

SpotClean 1.1.2

• Fixed a bug in vignettes for column sum on sparse matrix.

zijianni/SpotClean documentation built on June 12, 2024, 1:58 a.m.