jaccard_index: Calculate pairwise Jaccard Index between cells
In zky0708/2DImpute: 2DImpute: Imputing scRNA-seq data from correlations in both dimensions
Description
Usage
Arguments
Value
View source: R/jaccard_index.R
Description
This function calculates the Jaccard Index between each pair of cells
based on binarized expression matrix.
Usage
1
jaccard_index(Matrix, threshold = 0, ncores = 1)
Arguments
Matrix
An input matrix, where rows and columns represent
genes and cells, respectively.
threshold
The threshold for generating binary matrix.
Values greater than it are set to 1, otherwise 0. Default is 0.
ncores
Number of cores to use. Default is 1.
Value
A symmetric matrix containing pairwise Jaccard Index values
between cells.
zky0708/2DImpute documentation built on March 12, 2020, 3:13 a.m.
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Description Usage Arguments Value
View source: R/jaccard_index.R
Description
This function calculates the Jaccard Index between each pair of cells based on binarized expression matrix.
Usage
1 | jaccard_index(Matrix, threshold = 0, ncores = 1)
|
Arguments
Matrix |
An input matrix, where rows and columns represent genes and cells, respectively. |
threshold |
The threshold for generating binary matrix. Values greater than it are set to 1, otherwise 0. Default is 0. |
ncores |
Number of cores to use. Default is 1. |
Value
A symmetric matrix containing pairwise Jaccard Index values between cells.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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